2024↑
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N. D. Pasquale, R. Davidchack, and L. Rovigatti.
Cleaving: a lammps package to compute surface free energies.
Journal of Open Source Software, 9(94):5886, 2024.
doi:10.21105/joss.05886.
[BibTeX▼]
2023↑
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L. Rovigatti and F. Sciortino.
Entropy-driven phase behavior of associative polymer networks.
SciPost Phys., 15:163, 2023.
doi:10.21468/SciPostPhys.15.4.163.
[BibTeX▼] -
N. Di Pasquale, T. Hudson, M. Icardi, L. Rovigatti, and M. Spinaci.
A systematic analysis of the memory term in coarse-grained models: the case of the markovian approximation.
European Journal of Applied Mathematics, 34(2):326–345, 2023.
doi:10.1017/S0956792522000158.
[abstract▼] [BibTeX▼] -
V. Sorichetti, A. Ninarello, J. Ruiz-Franco, V. Hugouvieux, E. Zaccarelli, C. Micheletti, W. Kob, and L. Rovigatti.
Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks.
Journal of Chemical Physics, 158(7):074905, 2023.
doi:10.1063/5.0134271.
[abstract▼] [BibTeX▼] -
J.P.K. Doye, H. Fowler, D. Prešern, J. Bohlin, L. Rovigatti, F. Romano, P. Šulc, C.K. Wong, A.A. Louis, J.S. Schreck, M.C. Engel, M. Matthies, E. Benson, E. Poppleton, and B.E.K. Snodin.
The oxdna coarse-grained model as a tool to simulate dna origami.
Methods in Molecular Biology, 2639:93–112, 2023.
doi:10.1007/978-1-0716-3028-0_6.
[abstract▼] [BibTeX▼] -
E. Poppleton, M. Matthies, D. Mandal, F. Romano, P. Šulc, and L. Rovigatti.
Oxdna: coarse-grained simulations of nucleic acids made simple.
Journal of Open Source Software, 8(81):4693, 2023.
[BibTeX▼]
2022↑
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L. Rovigatti, J. Russo, F. Romano, M. Matthies, L. Kroc, and P. Šulc.
A simple solution to the problem of self-assembling cubic diamond crystals.
Nanoscale, 14(38):14268–14275, 2022.
doi:10.1039/d2nr03533b.
[abstract▼] [BibTeX▼] -
J. Russo, F. Romano, L. Kroc, F. Sciortino, L. Rovigatti, and P. Sulc.
Sat-assembly: a new approach for designing self-assembling systems.
Journal of Physics Condensed Matter, 34(35):354002, 2022.
doi:10.1088/1361-648X/ac5479.
[abstract▼] [BibTeX▼] -
L. Rovigatti and F. Sciortino.
Designing enhanced entropy binding in single-chain nanoparticles.
Physical Review Letters, 129(4):047801, 2022.
doi:10.1103/PhysRevLett.129.047801.
[abstract▼] [BibTeX▼]
2021↑
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S. Biagi, L. Rovigatti, M. Abbasi, L. Bureau, F. Sciortino, and C. Misbah.
Hydrodynamic instability and flow reduction in polymer brush coated channels.
Soft Matter, 17(40):9235–9245, 2021.
doi:10.1039/d1sm00638j.
[abstract▼] [BibTeX▼] -
J. Tauber, L. Rovigatti, S. Dussi, and J. van der Gucht.
Sharing the load: stress redistribution governs fracture of polymer double networks.
Macromolecules, 54(18):8563–8574, 2021.
doi:10.1021/acs.macromol.1c01275.
[abstract▼] [BibTeX▼] -
G. Del Monte, D. Truzzolillo, F. Camerin, A. Ninarello, E. Chauveau, L. Tavagnacco, N. Gnan, L. Rovigatti, S. Sennato, and E. Zaccarelli.
Two-step deswelling in the volume phase transition of thermoresponsive microgels.
Proceedings of the National Academy of Sciences of the United States of America, 118(37):e2109560118, 2021.
doi:10.1073/pnas.2109560118.
[abstract▼] [BibTeX▼] -
J. Vialetto, F. Camerin, F. Grillo, S.N. Ramakrishna, L. Rovigatti, E. Zaccarelli, and L. Isa.
Effect of internal architecture on the assembly of soft particles at fluid interfaces.
ACS Nano, 15(8):13105–13117, 2021.
doi:10.1021/acsnano.1c02486.
[abstract▼] [BibTeX▼] -
M. Formanek, L. Rovigatti, E. Zaccarelli, F. Sciortino, and A.J. Moreno.
Gel formation in reversibly cross-linking polymers.
Macromolecules, 54(14):6613–6627, 2021.
doi:10.1021/acs.macromol.0c02670.
[abstract▼] [BibTeX▼] -
E. Poppleton, R. Romero, A. Mallya, L. Rovigatti, and P. Šulc.
Oxdna.org: a public webserver for coarse-grained simulations of dna and rna nanostructures.
Nucleic Acids Research, 49(W1):W491–W498, 2021.
doi:10.1093/nar/gkab324.
[abstract▼] [BibTeX▼] -
A. Sengar, T.E. Ouldridge, O. Henrich, L. Rovigatti, and P. Šulc.
A primer on the oxdna model of dna: when to use it, how to simulate it and how to interpret the results.
Frontiers in Molecular Biosciences, 8:693710, 2021.
doi:10.3389/fmolb.2021.693710.
[abstract▼] [BibTeX▼] -
V. Sorichetti, A. Ninarello, J.M. Ruiz-Franco, V. Hugouvieux, W. Kob, E. Zaccarelli, and L. Rovigatti.
Effect of chain polydispersity on the elasticity of disordered polymer networks.
Macromolecules, 54(8):3769–3779, 2021.
doi:10.1021/acs.macromol.1c00176.
[abstract▼] [BibTeX▼]
2020↑
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I.E. Ventura Rosales, L. Rovigatti, E. Bianchi, C.N. Likos, and E. Locatelli.
Shape control of soft patchy nanoparticles under confinement.
Nanoscale, 12(41):21188–21197, 2020.
doi:10.1039/d0nr05058j.
[abstract▼] [BibTeX▼] -
F. Camerin, N. Gnan, J. Ruiz-Franco, A. Ninarello, L. Rovigatti, and E. Zaccarelli.
Microgels at interfaces behave as 2d elastic particles featuring reentrant dynamics.
Physical Review X, 10(3):031012, 2020.
doi:10.1103/PhysRevX.10.031012.
[abstract▼] [BibTeX▼] -
M. Heidenreich, J.M. Georgeson, E. Locatelli, L. Rovigatti, S.K. Nandi, A. Steinberg, Y. Nadav, E. Shimoni, S.A. Safran, J.P.K. Doye, and E.D. Levy.
Designer protein assemblies with tunable phase diagrams in living cells.
Nature Chemical Biology, 16(9):939–945, 2020.
doi:10.1038/s41589-020-0576-z.
[abstract▼] [BibTeX▼] -
G. Del Monte, F. Camerin, A. Ninarello, N. Gnan, L. Rovigatti, and E. Zaccarelli.
Charge affinity and solvent effects in numerical simulations of ionic microgels.
Journal of Physics Condensed Matter, 33(8):084001, 2020.
doi:10.1088/1361-648X/abc4cb.
[abstract▼] [BibTeX▼]
2019↑
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A. Suma, E. Poppleton, M. Matthies, P. Šulc, F. Romano, A.A. Louis, J.P.K. Doye, C. Micheletti, and L. Rovigatti.
Tacoxdna: a user-friendly web server for simulations of complex dna structures, from single strands to origami.
Journal of Computational Chemistry, 40(29):2586–2595, 2019.
doi:10.1002/jcc.26029.
[abstract▼] [BibTeX▼] -
A. Ninarello, J.J. Crassous, D. Paloli, F. Camerin, N. Gnan, L. Rovigatti, P. Schurtenberger, and E. Zaccarelli.
Modeling microgels with a controlled structure across the volume phase transition.
Macromolecules, 52(20):7584–7592, 2019.
doi:10.1021/acs.macromol.9b01122.
[abstract▼] [BibTeX▼] -
P.H. Handle, L. Rovigatti, and F. Sciortino.
Q-independent slow dynamics in atomic and molecular systems.
Physical Review Letters, 122(17):175501, 2019.
doi:10.1103/PhysRevLett.122.175501.
[abstract▼] [BibTeX▼] -
F. Camerin, M.Á. Fernández-Rodríguez, L. Rovigatti, M.-N. Antonopoulou, N. Gnan, A. Ninarello, L. Isa, and E. Zaccarelli.
Microgels adsorbed at liquid-liquid interfaces: a joint numerical and experimental study.
ACS Nano, 13(4):4548–4559, 2019.
doi:10.1021/acsnano.9b00390.
[abstract▼] [BibTeX▼] -
L. Rovigatti, N. Gnan, A. Ninarello, and E. Zaccarelli.
Connecting elasticity and effective interactions of neutral microgels: the validity of the hertzian model.
Macromolecules, 52(13):4895–4906, 2019.
doi:10.1021/acs.macromol.9b00099.
[abstract▼] [BibTeX▼] -
G. Del Monte, A. Ninarello, F. Camerin, L. Rovigatti, N. Gnan, and E. Zaccarelli.
Numerical insights on ionic microgels: structure and swelling behaviour.
Soft Matter, 15(40):8113–8128, 2019.
doi:10.1039/c9sm01253b.
[abstract▼] [BibTeX▼] -
L. Rovigatti, N. Gnan, L. Tavagnacco, A.J. Moreno, and E. Zaccarelli.
Numerical modelling of non-ionic microgels: an overview.
Soft Matter, 15(6):1108–1119, 2019.
doi:10.1039/c8sm02089b.
[abstract▼] [BibTeX▼]
2018↑
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M.J. Bergman, N. Gnan, M. Obiols-Rabasa, J.-M. Meijer, L. Rovigatti, E. Zaccarelli, and P. Schurtenberger.
A new look at effective interactions between microgel particles.
Nature Communications, 9(1):5039, 2018.
doi:10.1038/s41467-018-07332-5.
[abstract▼] [BibTeX▼] -
F. Camerin, N. Gnan, L. Rovigatti, and E. Zaccarelli.
Modelling realistic microgels in an explicit solvent.
Scientific Reports, 8(1):14426, 2018.
doi:10.1038/s41598-018-32642-5.
[abstract▼] [BibTeX▼] -
L. Rovigatti, F. Romano, and J. Russo.
Topical issue on advances in computational methods for soft matter systems.
European Physical Journal E, 41(8):98, 2018.
doi:10.1140/epje/i2018-11695-6.
[BibTeX▼] -
M.C. Engel, D.M. Smith, M.A. Jobst, M. Sajfutdinow, T. Liedl, F. Romano, L. Rovigatti, A.A. Louis, and J.P.K. Doye.
Force-induced unravelling of dna origami.
ACS Nano, 12(7):6734–6747, 2018.
doi:10.1021/acsnano.8b01844.
[abstract▼] [BibTeX▼] -
J. Ruiz-Franco, L. Rovigatti, and E. Zaccarelli.
On the effect of the thermostat in non-equilibrium molecular dynamics simulations.
European Physical Journal E, 41(7):80, 2018.
doi:10.1140/epje/i2018-11689-4.
[abstract▼] [BibTeX▼] -
L. Rovigatti, J. Russo, and F. Romano.
How to simulate patchy particles⋆.
European Physical Journal E, 41(5):59, 2018.
doi:10.1140/epje/i2018-11667-x.
[abstract▼] [BibTeX▼] -
E. Locatelli and L. Rovigatti.
An accurate estimate of the free energy and phase diagram of all-dna bulk fluids.
Polymers, 10(4):447, 2018.
doi:10.3390/polym10040447.
[abstract▼] [BibTeX▼] -
F. Romano and L. Rovigatti.
A nucleotide-level computational approach to DNA-based materials.
2018.
doi:10.1007/978-3-319-71578-0_3.
[BibTeX▼] -
L. Rovigatti, G. Nava, T. Bellini, and F. Sciortino.
Self-dynamics and collective swap-driven dynamics in a particle model for vitrimers.
Macromolecules, 51(3):1232–1241, 2018.
doi:10.1021/acs.macromol.7b02186.
[abstract▼] [BibTeX▼] -
L. Rovigatti, N. Gnan, and E. Zaccarelli.
Internal structure and swelling behaviour of in silico microgel particles.
Journal of Physics Condensed Matter, 30(4):044001, 2018.
doi:10.1088/1361-648X/aaa0f4.
[abstract▼] [BibTeX▼]
2017↑
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C. Cardelli, V. Bianco, L. Rovigatti, F. Nerattini, L. Tubiana, C. Dellago, and I. Coluzza.
The role of directional interactions in the designability of generalized heteropolymers.
Scientific Reports, 7(1):4986, 2017.
doi:10.1038/s41598-017-04720-7.
[abstract▼] [BibTeX▼] -
N. Gnan, L. Rovigatti, M. Bergman, and E. Zaccarelli.
In silico synthesis of microgel particles.
Macromolecules, 50(21):8777–8786, 2017.
doi:10.1021/acs.macromol.7b01600.
[abstract▼] [BibTeX▼] -
I. C. Gârlea, E. Bianchi, B. Capone, L. Rovigatti, and C. N. Likos.
Hierarchical self-organization of soft patchy nanoparticles into morphologically diverse aggregates.
Current Opinion in Colloid and Interface Science, 30:1–7, 2017.
doi:10.1016/j.cocis.2017.03.008.
[abstract▼] [BibTeX▼] -
E. Locatelli, P.H. Handle, C.N. Likos, F. Sciortino, and L. Rovigatti.
Condensation and demixing in solutions of dna nanostars and their mixtures.
ACS Nano, 11(2):2094–2102, 2017.
doi:10.1021/acsnano.6b08287.
[abstract▼] [BibTeX▼] -
L. Rovigatti, V. Bianco, J.M. Tavares, and F. Sciortino.
Communication: re-entrant limits of stability of the liquid phase and the speedy scenario in colloidal model systems.
Journal of Chemical Physics, 146(4):041103, 2017.
doi:10.1063/1.4974830.
[abstract▼] [BibTeX▼] -
M. Ronti, L. Rovigatti, J.M. Tavares, A.O. Ivanov, S.S. Kantorovich, and F. Sciortino.
Free energy calculations for rings and chains formed by dipolar hard spheres.
Soft Matter, 13(43):7870–7878, 2017.
doi:10.1039/c7sm01692a.
[abstract▼] [BibTeX▼] -
E. Bianchi, B. Capone, I. Coluzza, L. Rovigatti, and P.D.J. Van Oostrum.
Limiting the valence: advancements and new perspectives on patchy colloids, soft functionalized nanoparticles and biomolecules.
Physical Chemistry Chemical Physics, 19(30):19847–19868, 2017.
doi:10.1039/c7cp03149a.
[abstract▼] [BibTeX▼] -
S. Roldán-Vargas, L. Rovigatti, and F. Sciortino.
Connectivity, dynamics, and structure in a tetrahedral network liquid.
Soft Matter, 13(2):514–530, 2017.
doi:10.1039/c6sm02282k.
[abstract▼] [BibTeX▼]
2016↑
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J. Fernandez-Castanon, F. Bomboi, L. Rovigatti, M. Zanatta, A. Paciaroni, L. Comez, L. Porcar, C.J. Jafta, G.C. Fadda, T. Bellini, and F. Sciortino.
Small-angle neutron scattering and molecular dynamics structural study of gelling dna nanostars.
Journal of Chemical Physics, 145(8):084910, 2016.
doi:10.1063/1.4961398.
[abstract▼] [BibTeX▼] -
N.A. Mahynski, L. Rovigatti, C.N. Likos, and A.Z. Panagiotopoulos.
Bottom-up colloidal crystal assembly with a twist.
ACS Nano, 10(5):5459–5467, 2016.
doi:10.1021/acsnano.6b01854.
[abstract▼] [BibTeX▼] -
S. Biagi, L. Rovigatti, F. Sciortino, and C. Misbah.
Surface wave excitations and backflow effect over dense polymer brushes.
Scientific Reports, 6:22257, 2016.
doi:10.1038/srep22257.
[abstract▼] [BibTeX▼] -
B.E.K. Snodin, F. Romano, L. Rovigatti, T.E. Ouldridge, A.A. Louis, and J.P.K. Doye.
Direct simulation of the self-assembly of a small dna origami.
ACS Nano, 10(2):1724–1737, 2016.
doi:10.1021/acsnano.5b05865.
[abstract▼] [BibTeX▼] -
L. Rovigatti, B. Capone, and C.N. Likos.
Soft self-assembled nanoparticles with temperature-dependent properties.
Nanoscale, 8(6):3288–3295, 2016.
doi:10.1039/c5nr04661k.
[abstract▼] [BibTeX▼]
2015↑
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L. Rovigatti, P. Šulc, I.Z. Reguly, and F. Romano.
A comparison between parallelization approaches in molecular dynamics simulations on gpus.
Journal of Computational Chemistry, 36(1):1–8, 2015.
doi:10.1002/jcc.23763.
[abstract▼] [BibTeX▼] -
S.S. Kantorovich, A.O. Ivanov, L. Rovigatti, J.M. Tavares, and F. Sciortino.
Temperature-induced structural transitions in self-assembling magnetic nanocolloids.
Physical Chemistry Chemical Physics, 17(25):16601–16608, 2015.
doi:10.1039/c5cp01558h.
[abstract▼] [BibTeX▼] -
A.O. Ivanov, S.S. Kantorovich, L. Rovigatti, J.M. Tavares, and F. Sciortino.
Low temperature structural transitions in dipolar hard spheres: the influence on magnetic properties.
Journal of Magnetism and Magnetic Materials, 383:272–276, 2015.
doi:10.1016/j.jmmm.2014.10.013.
[abstract▼] [BibTeX▼] -
L. Rovigatti, N. Gnan, A. Parola, and E. Zaccarelli.
How soft repulsion enhances the depletion mechanism.
Soft Matter, 11(4):692–700, 2015.
doi:10.1039/c4sm02218a.
[abstract▼] [BibTeX▼]
2014↑
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L. Rovigatti, F. Smallenburg, F. Romano, and F. Sciortino.
Gels of dna nanostars never crystallize.
ACS Nano, 8(4):3567–3574, 2014.
doi:10.1021/nn501138w.
[abstract▼] [BibTeX▼] -
L. Rovigatti, F. Bomboi, and F. Sciortino.
Accurate phase diagram of tetravalent dna nanostars.
Journal of Chemical Physics, 140(15):154903, 2014.
doi:10.1063/1.4870467.
[abstract▼] [BibTeX▼]
2013↑
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J.P.K. Doye, T.E. Ouldridge, A.A. Louis, F. Romano, P. Šulc, C. Matek, B.E.K. Snodin, L. Rovigatti, J.S. Schreck, R.M. Harrison, and W.P.J. Smith.
Coarse-graining dna for simulations of dna nanotechnology.
Physical Chemistry Chemical Physics, 15(47):20395–20414, 2013.
doi:10.1039/c3cp53545b.
[abstract▼] [BibTeX▼] -
S. Dussi, L. Rovigatti, and F. Sciortino.
On the gas-liquid phase separation and the self-assembly of charged soft dumbbells.
Molecular Physics, 111(22-23):3608–3617, 2013.
doi:10.1080/00268976.2013.838315.
[abstract▼] [BibTeX▼] -
L. Rovigatti, J.M. Tavares, and F. Sciortino.
Self-assembly in chains, rings, and branches: a single component system with two critical points.
Physical Review Letters, 111(16):168302, 2013.
doi:10.1103/PhysRevLett.111.168302.
[abstract▼] [BibTeX▼] -
L. Rovigatti, S. Kantorovich, A.O. Ivanov, J.M. Tavares, and F. Sciortino.
Branching points in the low-temperature dipolar hard sphere fluid.
Journal of Chemical Physics, 139(13):134901, 2013.
doi:10.1063/1.4821935.
[abstract▼] [BibTeX▼] -
L. Rovigatti, D. De Las Heras, J.M. Tavares, M.M. Telo Da Gama, and F. Sciortino.
Computing the phase diagram of binary mixtures: a patchy particle case study.
Journal of Chemical Physics, 138(16):164904, 2013.
doi:10.1063/1.4802026.
[abstract▼] [BibTeX▼] -
S. Kantorovich, A.O. Ivanov, L. Rovigatti, J.M. Tavares, and F. Sciortino.
Nonmonotonic magnetic susceptibility of dipolar hard-spheres at low temperature and density.
Physical Review Letters, 110(14):148306, 2013.
doi:10.1103/PhysRevLett.110.148306.
[abstract▼] [BibTeX▼]
2012↑
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P. Šulc, F. Romano, T.E. Ouldridge, L. Rovigatti, J.P.K. Doye, and A.A. Louis.
Sequence-dependent thermodynamics of a coarse-grained dna model.
Journal of Chemical Physics, 137(13):135101, 2012.
doi:10.1063/1.4754132.
[abstract▼] [BibTeX▼] -
C. De Michele, L. Rovigatti, T. Bellini, and F. Sciortino.
Self-assembly of short dna duplexes: from a coarse-grained model to experiments through a theoretical link.
Soft Matter, 8(32):8388–8398, 2012.
doi:10.1039/c2sm25845e.
[abstract▼] [BibTeX▼] -
L. Rovigatti, J. Russo, and F. Sciortino.
Structural properties of the dipolar hard-sphere fluid at low temperatures and densities.
Soft Matter, 8(23):6310–6319, 2012.
doi:10.1039/c2sm25192b.
[abstract▼] [BibTeX▼] -
J.M. Tavares, L. Rovigatti, and F. Sciortino.
Quantitative description of the self-assembly of patchy particles into chains and rings.
Journal of Chemical Physics, 137(4):044901, 2012.
doi:10.1063/1.4737930.
[abstract▼] [BibTeX▼]
2011↑
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L. Rovigatti and F. Sciortino.
Self and collective correlation functions in a gel of tetrahedral patchy particles.
Molecular Physics, 109(23-24):2889–2896, 2011.
doi:10.1080/00268976.2011.609148.
[abstract▼] [BibTeX▼] -
L. Rovigatti, J. Russo, and F. Sciortino.
No evidence of gas-liquid coexistence in dipolar hard spheres.
Physical Review Letters, 107(23):237801, 2011.
doi:10.1103/PhysRevLett.107.237801.
[abstract▼] [BibTeX▼] -
L. Rovigatti, W. Kob, and F. Sciortino.
The vibrational density of states of a disordered gel model.
Journal of Chemical Physics, 135(10):104502, 2011.
doi:10.1063/1.3626869.
[abstract▼] [BibTeX▼]